species:   Fugra
pid:       PID0992
parent:    FgmilR-7dps-24
paralog:   
locus:     NC_026474.1:8262850-8263101
matures:   ['UAGCUUGGAAUCACGGAUAGAAC', 'UAUAUUUGCCAUCGUUGCG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026474.1:8262850-8263101

0 out of bounds
6 alignments
4 proper strand
4 stranded perfect matches

    *************************                                                                                                                                                                                                      *********************    
GUCAAGUAGCUUGGAAUCACGGAUAGAACUUUCGUUGCUUUUUCUAUUGGGCUGAAAGUAUUAGACUGAGACUUUCACAUCCUAUCCCGUGCAAGGAAUCGCUCAUGAGUAUAAACAGUGCAUUGCAUCUCAACCAAUUGUAGGGCGGCUUGAAGGUCUUAAACAUAGUCGCAGGCAACAUCAUCACCUUGUCCUACCAGCCGAUAUACAAAGAGUAUCGAUAACUAAAUAUAUUUGCCAUCGUUGCGAGGC
(((..(((((.(((.....((((((......(((.((((((((.((((.(((((.........((((((((((((((...((...(((.(((((((.........((((........((((...)))))))).))..)))))))).))..))))))))))......))))..((((((..........))).)))..))))).).))).)))))))).)))..........)))))))))..)))))..)))
------UAGCUUGGAAUCACGGAUAGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=4 c
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUAUUUGCCAUCGUUGCG---- l=19 a=0 c*
------UAGCUUGGAAUCACGGAUAGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=4 ma
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUAUUUGCCAUCGUUGCG---- l=19 a=0 ma*

------UAGCUUGGAAUCACGGAUAGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=4 (c,ma)

mb-01010
ax-1001011
ku-01
ss-111110101010
fn-101
